| Laboratory
Diagnosis
Laboratory diagnosis depends
upon the demonstration of the virus and or a rising antibody titre. Following
tests are available (kits for these are being developed and may be available
soon):
1. Virus culture
2. RT-PCR
3. Immunofluorescence using monoclonal antibody
to H5N1
4. Serological
tests (ELISA and IFAT) for detection of specific antibody
Of these, virus culture can be
done in laboratories with infrastructure, skills and reagents for isolation
of influenza virus and confirmation of H5N1 subtype. These facilities are
available only in a limited number of laboratories. A list of some of the
reference laboratories that can provide diagnostic services can be seen at Annex 1.
Primers for performing RT-PCR
tests are being developed and expected to be available shortly. The
information on these primers shall be made available on websites of WHO, CDC,
Atlanta, Ga and other institutes which may develop these.
Direct immunofluorescence test
can be used to ascertain presence of virus using H5N1 specific monoclonal
antibody conjugated with a fluoresceing dye.
The laboratory tests for the
diagnosis of influenza A/H5 infection included in the case definition are
considered the standard for the identification of these viruses. WHO
recommends that laboratory results for influenza A/H5 are corroborated by a
national influenza centre or other national reference laboratory. Any sample
or isolate that is a non-typable influenza A (i.e.non-H3 or non-H1 subtype)
should be sent immediately to a WHO collaborating centre on influenza or
other WHO-recommended reference laboratory (see Annex 1). WHO also recommends
that the first positive laboratory identification of influenza A/H5 virus in
humans in any country or territory be confirmed by one of the WHO reference
laboratories for diagnosis of influenza A/H5 infection. In addition, and
until further notice, WHO requests that all human influenza A/H5 virus
isolates or samples be sent to one of the WHO reference laboratories for
diagnosis of influenza A/H5 infection.
Tests for diagnosing all
influenza strains of animals and humans are rapid and reliable. Many
laboratories in the WHO global influenza network have the necessary
high-security facilities and reagents for performing these tests as well as
considerable experience. Rapid bedside tests for the diagnosis of human
influenza are also available, but do not have the precision of the more
extensive laboratory testing that is currently needed to fully understand the
most recent cases and determine whether human infection is spreading, either
directly from birds or from person to person
Rapid tests for diagnosis of influenza type A
Commercial rapid diagnostic
tests are available that can be used by to detect influenza viruses within 30
minutes. These rapid tests provide information upto type level. Which means
that by using rapid kits one can obtain a fairly reliable indication about
the presence of Influenza A virus. Confirmation of H5N1 subtype can be done
only in a well equipped laboratory with all facilities and adequate
biocontainment measures (details given in annex 1). Since most of the rapid
tests have good specificity, a negative test can give broad indication about
absence of influenza virus in specimen.
As of now no commercial kit is available that can diagnose infection
due to H5N1 subtype. The types of specimens acceptable for use (i.e., throat
swab, nasal wash, or nasal swab) also vary by test.
Despite the availability of
rapid diagnostic tests, collecting clinical specimens for viral culture is
critical, because only culture isolates can provide specific information
regarding circulating influenza subtypes and strains. This information is
needed to establish diagnosis of avian influenza.
Keeping their limitations in
mind, rapid diagnostics for influenza have proven to be valuable in early
diagnosis which enables treatment in a timely fashion. Anti-influenza
treatments must be administered within 48 hours of onset of symptoms in order
to be effective. Some of the rapid kits appear to be quite sensitive (mean of
87.4%; range of 74-100%) for detection of virus in nasopharyngeal specimens
and is preferred for screening for influenza.
7.1 Collection of human specimens
General information
Respiratory virus diagnosis
depends on the collection of high-quality specimens, their rapid transport to the laboratory and
appropriate storage before laboratory testing. Virus is best detected in
specimens containing infected cells and secretions. Specimens for the direct
detection of viral antigens or nucleic acids and virus isolation in cell
cultures should be taken during the first 3 days after onset of clinical
symptoms.
Type of specimens
A variety of specimens are
suitable for the diagnosis of virus infections of the upper respiratory tract:
nasal swab
nasopharyngeal swab
nasopharyngeal aspirate
nasal wash
throat swab.
In addition to swabs from the
upper respiratory tract, invasive procedures can be performed for the
diagnosis of virus infections of the lower respiratory tract where clinically
indicated:
transtracheal aspirate
bronchoalveolar lavage
lung biopsy
post-mortem lung or tracheal tissue.
Specimens for the
laboratory diagnosis of highly pathogenic avian influenza A/H5 should be collected in the following order
of priority :
nasopharyngeal aspirates
acute serum
convalescent serum.
Specimens for direct detection of viral antigens by
immunofluorescence staining of infected cells should be refrigerated and
processed within 1–2 hours. Specimens for use with commercial near-patient
tests should be stored in accordance with the manufacturer’s instructions.
Specimens for virus isolation should be refrigerated immediately after
collection and inoculated into susceptible cell cultures as soon as possible.
If specimens cannot be processed within 48–72 hours, they should be kept
frozen at or below –70 °C.
Respiratory specimens should be collected and
transported in virus transport media. A number of media that are satisfactory
for the recovery of a wide variety of viruses are commercially available.
Procedure for specimen collection is described in Annex 2.
7.2 Storage
and transport of specimens
To preserve the viral integrity in specimens for
inoculation, place specimens should be placed in appropriate viral transport
medium and stored at recommended temperatures: for respiratory samples and
frozen tissues -70 oC, for serum 4-8 oC for 24-48 hrs, or at -20oC for longer
periods. Expert advice should be sought when in doubt about storage conditions
related to the type of test to be done. Details of storage and transportation
can be seen at Annex 3
Labelling and documentation
Specimen labeling : Each specimen should be
labeled with the patient ID number and date collected.
Accompanying documentation : The package should
include a linelist for all specimens including patient name and ID number,
date collected, samples collected, clinical contact name and phone number,
and submitter contact name and phone number (Annex 2).
7.3 Biosafety guidelines
1. The laboratories must apply good laboratory
practices and standard precautions.
2. The virology work, PCR as well as preparations
for transportation of infectious material should be performed in Biosafety Level (BSL) 2
facilities using BSL-3 practices
3. The following activities require BSL-3
facilities and BSL-3 work practices :
Culture-based attempts to isolate the agent,
including inoculation onto cell culture,
and eggs.
Initial characterization of agents recovered
in cultures of specimens.
Any procedure that may generate aerosols or
droplets and these should be performed in a biosafety cabinet.
4. Laboratory workers should wear following
personal protective equipment
Protective clothing, preferably coveralls plus
impermeable apron or long cuffed sleeves surgical gowns plus impermeable
apron;
Disposable examination gloves;
Masks: the minimum requirement are well-fitted
surgical masks. Where available the
use of N95 masks is recommended.
Goggles.
Boots or some protective foot cover that can
be disinfected
Frequent hand washing
When a procedure or process cannot be conducted within a
biological safety cabinet, then appropriate combinations of personal
protective equipment (e.g. respirators, face shields) and physical
containment devices (e.g. centrifuge safety cups or sealed rotors) must be
used.
In cases where laboratory facilities do not meet at least
basic laboratory BSL2 containment conditions, consideration should be given
to referral of specimens to suitably equipped reference laboratories (link to
the list of reference labs) for primary diagnostic tests.
For laboratories that meet BSL3 containment standards and
are operated by staff trained in the use of appropriate BSL3 work practices
the following procedures can be undertaken:
Performance of diagnostic tests that involve
propagation of viral agents in vitro or in vivo
Work involving the replication of influenza H5
virus in cell culture and/or storage of cell culture isolates
Recovery of viral agents from cultures of
influenza H5 specimens
Manipulations involving growth or
concentration of influenza H5 virus
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