| Laboratory
Diagnosis
Laboratory diagnosis depends
upon the demonstration of the virus and or a rising antibody titre. Following tests are available (kits for these are
being developed and may be available soon):
1. Virus culture
2. RT-PCR
3. Immunofluorescence using monoclonal
antibody to H5N1
4. Serological tests (ELISA and IFAT) for detection of specific
antibody
Of these, virus culture can be
done in laboratories with infrastructure, skills and reagents for isolation
of influenza virus and confirmation of H5N1 subtype. These facilities are
available only in a limited number of laboratories. A list of some of the
reference laboratories that can provide diagnostic services can be seen at Annex 1.
Primers for performing RT-PCR
tests are being developed and expected to be available shortly. The
information on these primers shall be made available on websites of WHO, CDC,
Atlanta, Ga and other institutes which may
develop these.
Direct immunofluorescence
test can be used to ascertain presence of virus using H5N1 specific
monoclonal antibody conjugated with a fluoresceing
dye.
The laboratory tests for the
diagnosis of influenza A/H5 infection included in the case definition are
considered the standard for the identification of these viruses. WHO
recommends that laboratory results for influenza A/H5 are corroborated by a
national influenza centre or other national reference laboratory.
Any sample or isolate that is a non-typable
influenza A (i.e.non-H3 or non-H1 subtype) should be sent immediately to a
WHO collaborating centre on influenza or other WHO-recommended reference
laboratory (see Annex 1). WHO also recommends that the first positive laboratory
identification of influenza A/H5 virus in humans in any country or territory
be confirmed by one of the WHO reference laboratories for diagnosis of
influenza A/H5 infection. In addition, and until
further notice, WHO requests that all human influenza A/H5 virus isolates or
samples be sent to one of the WHO reference laboratories for diagnosis of
influenza A/H5 infection.
Tests for diagnosing all
influenza strains of animals and humans are rapid and reliable. Many
laboratories in the WHO global influenza network have the necessary
high-security facilities and reagents for performing these tests as well as
considerable experience. Rapid bedside tests for the diagnosis of human
influenza are also available, but do not have the precision of the more extensive
laboratory testing that is currently needed to fully understand the most
recent cases and determine whether human infection is spreading, either
directly from birds or from person to person
Rapid tests for diagnosis of influenza type A
Commercial rapid diagnostic
tests are available that can be used by to detect influenza viruses within 30
minutes. These rapid tests provide information upto
type level. Which means that by using rapid kits one can
obtain a fairly reliable indication about the presence of Influenza A virus.
Confirmation of H5N1 subtype can be done only in a well equipped laboratory
with all facilities and adequate biocontainment
measures (details given in annex 1). Since most of the rapid tests have good
specificity, a negative test can give broad indication about absence of
influenza virus in specimen. As of now
no commercial kit is available that can diagnose infection due to H5N1
subtype. The types of specimens acceptable for use (i.e., throat swab, nasal
wash, or nasal swab) also vary by test.
Despite the availability of
rapid diagnostic tests, collecting clinical specimens for viral culture is
critical, because only culture isolates can provide specific information
regarding circulating influenza subtypes and strains. This information is
needed to establish diagnosis of avian influenza.
Keeping their limitations in
mind, rapid diagnostics for influenza have proven to be valuable in early
diagnosis which enables treatment in a timely fashion. Anti-influenza
treatments must be administered within 48 hours of onset of symptoms in order
to be effective. Some of the rapid kits appear to be quite sensitive (mean of
87.4%; range of 74-100%) for detection of virus in nasopharyngeal specimens
and is preferred for screening for influenza.
7.1 Collection of human specimens
General information
Respiratory virus diagnosis depends on the collection
of high-quality specimens, their rapid transport to the laboratory
and appropriate storage before laboratory testing. Virus is best detected in
specimens containing infected cells and secretions. Specimens for the direct
detection of viral antigens or nucleic acids and virus isolation in cell
cultures should be taken during the first 3 days after onset of clinical
symptoms.
Type of specimens
A variety of specimens are suitable for the diagnosis
of virus infections of the upper respiratory tract:
nasal swab
nasopharyngeal swab
nasopharyngeal aspirate
nasal wash
throat swab.
In addition to swabs from the upper respiratory tract,
invasive procedures can be performed for the diagnosis of virus infections of
the lower respiratory tract where clinically indicated:
transtracheal
aspirate
bronchoalveolar lavage
lung biopsy
post-mortem lung or
tracheal tissue.
Specimens for the laboratory diagnosis of highly
pathogenic avian influenza A/H5 should
be collected in the following order of priority :
1. nasopharyngeal aspirates
2. acute serum
3. convalescent serum.
Specimens for direct detection of viral antigens by immunofluorescence staining of infected cells should be
refrigerated and processed within 1–2 hours. Specimens for use with
commercial near-patient tests should be stored in accordance with the
manufacturer’s instructions. Specimens for virus isolation should be
refrigerated immediately after collection and inoculated into susceptible
cell cultures as soon as possible. If specimens cannot be processed within
48–72 hours, they should be kept frozen at or below –70 °C.
Respiratory specimens should be collected and
transported in virus transport media. A number of media that are satisfactory
for the recovery of a wide variety of viruses are commercially available.
Procedure for specimen collection is described in Annex 2.
7.2 Storage
and transport of specimens
To preserve the viral integrity in specimens for inoculation,
place specimens should be placed in appropriate viral transport medium and
stored at recommended temperatures: for respiratory samples and frozen
tissues -70 oC, for serum 4-8 oC
for 24-48 hrs, or at -20oC for longer periods. Expert advice should be sought
when in doubt about storage conditions related to the type of test to be
done. Details of storage and transportation can be seen at Annex 3
Labelling and
documentation
Specimen labeling : Each
specimen should be labeled with the patient ID number and date collected.
Accompanying documentation : The package should include
a linelist for all specimens including patient name
and ID number, date collected, samples collected, clinical contact name and
phone number, and submitter contact name and phone number (Annex 2).
7.3 Biosafety guidelines
1. The laboratories must apply good laboratory
practices and standard precautions.
2. The virology work, PCR as well as preparations
for transportation of infectious material should be performed in Biosafety
Level (BSL) 2 facilities using BSL-3 practices
3. The following activities require BSL-3
facilities and BSL-3 work practices :
Culture-based attempts to isolate the agent,
including inoculation onto cell culture,
and eggs.
Initial characterization of agents recovered
in cultures of specimens.
Any procedure that may generate aerosols or
droplets and these should be performed in a biosafety
cabinet.
4. Laboratory workers should wear following
personal protective equipment
Protective clothing, preferably coveralls plus
impermeable apron or long cuffed sleeves surgical gowns plus impermeable
apron;
Disposable examination gloves;
Masks: the minimum
requirement are well-fitted surgical masks. Where available the use of N95 masks is
recommended.
Goggles.
Boots or some protective foot cover that can
be disinfected
requent hand washing
When a procedure or process
cannot be conducted within a biological safety cabinet, then appropriate
combinations of personal protective equipment (e.g. respirators, face
shields) and physical containment devices (e.g. centrifuge safety cups or
sealed rotors) must be used.
In cases where laboratory
facilities do not meet at least basic laboratory BSL2 containment conditions,
consideration should be given to referral of specimens to suitably equipped
reference laboratories (link to the list of reference labs) for primary
diagnostic tests.
For laboratories that meet BSL3
containment standards and are operated by staff trained in the use of
appropriate BSL3 work practices the following procedures can be undertaken:
Performance of diagnostic tests that involve
propagation of viral agents in vitro or in vivo
Work involving the replication of influenza H5
virus in cell culture and/or storage of cell culture isolates
Recovery of viral agents from cultures of
influenza H5 specimens
Manipulations involving growth or
concentration of influenza H5 virus
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