Guidelines on Standard Operating Procedures for Laboratory Diagnosis of HIV-Opportunistic Infections

Standard Operating Procedures for the Laboratory Diagnosis of Common Parasitic Opportunistic Infections in HIV/AIDS Patients

 

*      Introduction

*      Clinical association and diagnosis  

*      Identification of parasites

*      Protozoa in wet mounts

*      References

*      Appendices

 

*      Introduction

Opportunistic parasitic infections can cause severe morbidity and mortality. Since many of these infections are treatable, an early and accurate diagnosis is important. This can be accomplished by a variety of methods such as direct demonstration of the parasite and by serological tests to detect antigen and/or specific antibodies. Adherence to conventional procedure may not be appropriate in patients with AIDS. For example, antibody response may be poor in these patients and therefore immunodiagnostic tests have to be interpreted with caution.

Pneumocystis carinii, Cryptosporidium, Toxoplasma gondii, Microsporidia and Strongyloides stercoralis are commonly detected parasites. Less common parasites are Acanthamoeba, Cyclospora and Isospora belli. Detection of these parasites will help in proper management and treatment of these patients since drugs are available for most of these opportunistic infections.

Emphasis will be made on the importance of these parasites and the methods of their diagnosis in HIV/AIDS patients.

*      Clinical association and diagnosis

Pneumocystis carinii, a ubiquitous extracellular protozoan is a common pulmonary pathogen in immunocompromised hosts and is one of the AIDS defining events as part of the CDC’s case definition of AIDS. In such subjects, the disease manifests as interstitial pneumonia. Laboratory diagnosis is made by demonstrating cysts or trophozoites by Giemsa, Toluidine blue or Methenamine silver nitrate stain in lung biopsy, hypopharyngeal washings, transbronchial aspirations or transthoracal needle aspiration. Circulating antigen demonstration by ELISA or PCR is also confirmatory. For these tests, the samples will have to be sent to the reference laboratory.

Cryptosporidiosis, a disease commonly caused by Cryptosporidium parvum causes severe chronic and even fatal diarrhoea with malabsorption and dehydration. Diarrhoea is watery without blood and mucus, may be scanty or continuous as much as 12-17 litres per day. Extraintestinal infections in liver and lungs are known in AIDS patients. Laboratory diagnosis is made by demonstrating oocysts in the specimens using modified acid fast stain or safranin methylene blue technique.

Toxoplasmosis, a disease caused by an ubiquitous intracellular protozoan Toxoplasma gondii, is a world wide zoonosis. The cat is the definitive host for the sexual stage and produces oocysts that are eliminated in the stool. All other infected animals and humans are intermediate hosts. In an immunocompromised host the disease presents as toxoplasmic encephalitis. Diagnosis is made by CT scan showing characteristic cerebral hypodense lesions with ring-enhancement after IV contrast. For definitive diagnosis, brain biopsy is done to demonstrate the organism. Toxoplasma antigen demonstration by ELISA or PCR from blood or CSF is possible for which facilities may be available in reference laboratories or centres of excellence and samples need to be sent to these laboratories.

Microsporidiosis, a disease commonly caused by Enterocytozoon bienneusii and Septata intestinalis, causes intractable diarrhoea and weight loss in AIDS patients. Diagnosis is made by demonstrating Microsporidia spores in stool specimens by modified Trichrome stain or Gram Chromotrop stain and histologically from the intestinal biopsy.

Strongyloides stercoralis, an intestinal nematode, is potentially lethal because of its potential to cause an overwhelming autoinfection in immunocompromised hosts. Diarrhoea is the major clinical manifestation. Eosinophilia and local or generalized rash may also occur. Definitive diagnosis is made by demonstrating larvae in faeces or duodenal fluid.

Cyclospora, another intestinal coccidian parasite causes prolonged, often relapsing watery diarrhoea and weight loss. Modified safranin staining technique is recommended to demonstrate oocysts in the faecal smear.

Isosporiasis caused by Isospora belli produces protracted and sometimes profuse diarrhoea. The oocysts are demonstrated in faecal smears by modified acid fast stain.

*     Safety considerations

 

Specimen collection

*      Universal precautions to be followed, avoid contact with specimens with ungloved hands.

Specimen transport and storage

*      Sterile leak-proof container in a sealed plastic bag.

Specimen processing

*      At least biosafety level II with good laboratory practice.

 

The above guidelines should be supplemented with recommendations from the local health hazard and risk assessment committee.

 

*     Specimen collection

 

Optimum time of specimen collection

*      Ideally as close to the onset of symptoms as possible;

*      Before initiation of antiparasitic therapy;

*      First morning sample

Correct specimen type

*      Waxed cardboard box with an overlapping lid, or a plastic cup or box with a tight-fitting lid and two applicator sticks

*      Three consecutive stool specimens at1-day interval is ideal

*      For P. carinii, collect transbronchial aspirate, 10 ml bronchial washing or biopsy in plain sterile vial

*      For antigen detection collect 3-5 ml blood in plain vial or 1-2 ml CSF in a plain sterile vial

 

*     Specimen transport and storage

 

Time between specimen collection and processing

*      The specimen must reach the laboratory within half an hour after passage. If this is not possible, specimens must be treated with preservatives like10% formaline or PVA

Storage

*      Specimen should be stored in ice box or refrigerator.

 

*     Specimen processing

 

Proper documentation upon receipt of specimen

*      Maintenance of laboratory records with lab number. Laboratory request form should indicate the specific test for P. carinii and T. gondii

*      Laboratory record and laboratory number

Initial processing

*      Depends upon the clinical criteria and parasite suspected

*      Stool sample; examine for consistency, blood, mucous or any adult parasite;

*      Blood sample; centrifuge at 1000-1500 rpm for five minutes and separate serum and store at –200C for antigen detection;

*      CSF and other body fluids to be centrifuged at 2000 – 2500 rpm for 10 minutes, and supernatant collected and stored at –200C for antigen detection;

*      Sediment to be used for smear and wet mount;

*      Blood specimen for PCR and antigen detection to be sent to the reference laboratory, and

*      Impression smear or necropsy or biopsy specimen for P. carinii and T. gondii.

Microscopy

*      Very important; can predict the nature of the infection

*      Procedure employed depends upon specimen

*      Examine saline or iodine wet mount for protozoa and larvae, directly from faecal material or concentrated specimen

*      Giemsa stain or toluidine blue stain for P. carinii and T. gondii

*      Modified acid fast stain or Safranin methylene blue for Cryptosporidium and Cyclospora

*      Gram chromotrope or modified trichrome stain for Microspodia

Histopathology

*      Hematoxylin eosin stain, PAS stain and methenamine silver nitrate stain for P. carinii

*      Hematoxylin eosin stain and PAS stain for T. gondii

Serology

*      Supernatant from centrifuged blood or body fluids to be used for antigen or antibody detection where applicable.

*

Reporting procedure

*      Reporting should include appearance, consistency, presence of blood, mucus, pus, worms or worm fragments

*      The report should mention the presence of RBCs, WBCs and parasite detected. The results should be reported immediately by telephone personally if possible.

Preservation of specimens

*      Preserve stool samples in equal amount of 10% buffered formalin.

*      Screw the cap of the vial securely.

*      Wrap a piece of adhesive tape around the top of vial to prevent leakage.

*      Pack the vial(s) carefully in the box for sending to reference laboratory.

Disposal of specimen

*      Stool samples collected in paper boxes, dispose of by burning the entire container. If collected in metal or glass container, add enough 10% formalin to kill the parasite.

*      Used slides to be put in a pan of disinfectant such as 1% sodium hypochlorite solution for at least one hour before washing.

*      Push the coverslip off the slide into the disinfectant pan with applicator stick.

*      All used glassware to be put into disinfectant pan for at least one hour before washing.

*      Applicator sticks and gauge pieces should be burnt.

 

*     Collection of faecal specimens

 

Because of the fragile nature of many intestinal parasites, and the need to maintain their morphology for accurate identification, reliable microscopic diagnosis cannot be made unless the stool is collected properly.

Give the patient the following:

*     Because of the fragile nature of many intestinal parasites, and the need to maintain their morphology for accurate identification, reliable microscopic diagnosis cannot be made unless the stool is collected properly.

*     Give the patient the following:

 

If waxed boxes or plastic cups are not available, tin boxes or glass jars can be used. Three specimens are usually recommended, at one-day intervals, to detect all parasitic infections. A variety of substances may interfere with the examination of stool specimens for parasites (e.g. laxatives, antacids, ingested contrast media and certain antibiotics).

The container with the specimens should be labelled clearly with the following information:

*     Patient’s name or number

*     Date of collection 

*     Time the patient passed the stool (ask the patient when he/she passed the stool).

 

Tell the patient to pass the stool specimen directly into the container, or to pass the stool on to a piece of paper and use the applicator sticks to transfer it to the container. If paper is not available, the faeces can be passed on to a large, clean leaf. However, the stool must be transferred immediately to the specimen container. It should not remain on the leaf or be brought to the laboratory on the paper/leaf.

The stool specimen must be large enough for satisfactory examination. The smallest quantity that should be accepted is about the size of a pigeon’s egg. Urine and dirt should be excluded. Urine will destroy any protozoan trophozoites and dirt will interfere with the examination. If the specimen is too small, or if it is mixed with urine or dirt, it should not be accepted. Ask the patient to pass another specimen.

*     Specimen transport and storage

Some organisms, especially amoebic trophozoites, will begin to disintegrate or change within a short time after passage and become unrecognizable. Warm temperatures will hasten these changes. Therefore, specimens must reach the laboratory very soon (i.e., within half an hour) after passage. If this is not possible, the specimen must be treated with preservatives.

Keep the carton containing the specimen in a refrigerator, or if this is not possible in the coolest, shadiest area in the laboratory. Do not keep the specimen artificially warm and do not leave it in the sun.

*     Specimen examination

 

*     Macroscopic examination of stool

 

*     As soon as the specimen is received in the laboratory, check the consistency (degree of moisture) and write one of the following on the container: formed, soft, loose, or watery. The consistency, or degree of moisture, will be a guide as to whether the trophozoite stage is in the stool. The appropriate techniques to be used are shown in the Table.

*     If several specimens are received at the same time, those containing blood and mucus should be examined first followed by liquid specimens. These specimens are the most likely to contain amoebic trophozoites (which die soon after being passed) and must be examined within an hour after passage. Formed specimens may be examined at any time during the first day, but should not be left overnight (cysts may disintegrate).

 

*     Microscopic examination of Wet Mounts

Wet mounting is the simple and easiest technique for examination of faeces, and this method should be performed in all laboratories at the peripheral level.

A wet mount can be prepared directly from faecal material or from concentrated specimens. The basic types of wet mount to be used for each faecal examination are saline and iodine.

The saline wet mount is used for the initial microscopic examination of stools. It is employed primarily to demonstrate worm eggs, larvae, protozoan trophozoites, and cysts. This type of mount can also reveal the presence of red blood cells and white blood cells.

Categories of Stool and Appropriate Techniques to be used

Consistency

Protozoan stage most likely to be found*

Technique to be used

Saline

Iodine

Buffered Methylene blue

Formed

Cysts

+

+

+

Soft

Cysts

(occasionally trophozoites)

+

+

+

+

Loose

Trophozoites

+

 

+

 

*Worm eggs and larvae may be found in stools of any consistency

 

*     The Iodine wet mount is used mainly to stain glycogen and the nuclei of cysts, if present. Cysts can usually be specifically identified in this mount.

*     Buffered Methylene Blue (BMB) wet mount should be prepared every time amoebic trophozoites are seen in a saline wet mount or when their presence is suspected. BMB stain does not stain amoebic cysts. It is only appropriate for fresh unpreserved specimens.

 

 

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