Guidelines on Standard Operating Procedures for Laboratory Diagnosis of HIV-Opportunistic Infections

Standard Operating Procedures for the Laboratory Diagnosis of Common Parasitic Opportunistic Infections in HIV/AIDS Patients

 

*      Identification of parasites

 

*     Worm eggs and larvae in saline mounts

Eggs may be easily detected and identified in saline mounts. They should not be stained (stains may interfere with identification). Most of the eggs are large enough to be recognized with the low-power 10x objective, but a few small eggs will require a high-power dry lens. In saline mounts, larvae of Strongyloides stercoralis may be seen. Hookworm larvae are not usually present if the sample is fresh, but it may be necessary to distinguish between these two species if an old sample is examined

*     Protozoa in wet mounts

 

*     Saline wet mounts

In saline mounts, trophozoites and cysts of amoebae (cysts of Isospora belli) and flagellates may be seen. Cysts will appear as round or oval, refractile structures; the trophozoites of amoebae may be round or irregular; the trophozoites of flagellates are usually pyriform (elongated, pear-shaped). In freshly passed faeces (the stool must not be more than an hour old), motile trophozoites may be seen. Motility can be very helpful in identifying species, especially in the case of flagellates.

Organisms may be detected with the low-power 10x objective, but a high-power, dry objective will be necessary to reliably identify the structure as a cyst or trophozoite. With the high-power, dry objective, you can see motility, inclusions like erythrocytes and yeast in amoebic trophozoites, chromatoid bodies in amoebic cysts, and the shape and structural details (e.g. sucking discs, spiral grooves, or filaments) of flagellate trophozoites and cysts. Oocysts of Isospora belli are ellipsoidal, 22-33 x 12-15 µ m size, containing two sporocysts each. You will not be able to see any detail in the nucleus in saline mounts. However, it is necessary to regulate the microscope illumination carefully so that the objects appear clearly. Too much or too little light will interfere with your observations. It is also necessary to focus up and down to see all the layers (levels) of the specimen. Remember to examine the whole coverslip area in a systematic manner to reduce the chances of overlooking organisms.

*      BMB mount

 

The nucleus and inclusions will stain dark blue and the cytoplasm will stain light blue. Look for peripheral nuclear granules around the nucleus for Entamoeba species.

 

*     Iodine wet mount

Iodine mounts are examined for protozoa and coccidian cysts. They can be detected with the 10x objective, but they are not as refractile as in saline mounts. High-power dry magnification must be used to see the characteristics of the cysts and they must be measured to ensure correct identification. In the iodine mount, cytoplasm of the cysts will stain yellow or light brown and nuclei will stain dark brown.

In iodine-stained cysts of Entamoeba, the arrangement of the peripheral chromatin and the position of the karyosome can be seen. (If the peripheral chromatin is not present, the cyst is not Entamoeba species.) These peripheral chromatoid bodies stain light yellow and may not be very clear. Sometimes, young cysts contain glycogen; this stains dark brown with iodine.

In iodine-stained flagellate cysts, the fibrils (filaments) can be seen.

In iodine-stained coccidian cysts, a central undivided mass of protoplasm can be seen.

Specific identification of amoebic and flagellate cysts can usually be made from iodine wet mounts. However, occasionally a definite identification cannot be made, and it may be necessary to use permanent stains.

*     Modified Ziehl - Neelsen Stain

When stained by Ziehl -Neelsen technique, Cryptosporidium oocysts appear as bright rose-pink spherules generally 4-6 µm in diameter, in a pale green background. The color may be unevenly distributed due to variable carbol fuchsin uptake by the oocyst wall, especially in rapidly shed young with a less mature wall.

Yeast cells and faecal debris assume the color of the blue or green counter stain. Although sometimes sporozoites can be clearly seen within the oocysts, size is important in differentiating oocysts from other organisms with similar staining properties. Cyclospora spp. resemble Cryptosporidium parvum but are roughly twice the size, i.e. 8-10 µ m in diameter. As this is unsporulated, they show a spherical cytoplasmic mass.

The large oocysts of Isospora belli contain two sporocysts measuring 12-14 x 7-9 µm each with four sporozoites of 20-23 x 11-19 µm in size elongated or ellipsoidal in shape with no residuum (in freshly passed stool, only one sporocyst may be seen).

*     Modified gram chromotrope stain for Microsporidia

 

When stained by Gram chromotrope staining technique, Microsporidia spores are ovoid and refractile. They measure approximately 0.9-1.5 µ m in diameter. The spore wall stains bright pinkish red. The cellular content of some spores appears transparent and some spores show a distinct pinkish-red-stained belt-like stripe that girds the spores diagonally or equatorially. Although other faecal elements, such as yeast, sometimes stain reddish, they can be distinguished from Microsporidia spores by their large size and more intense staining. Most bacteria and background debris counterstain faint green.

 

*     Reporting procedure

 

Reporting should include appearance of specimen:

 

*     Consistency

*     Blood, mucus, pus

*     Worms or worm fragments

 

The written report should include WBCs, erythrocytes, and organisms detected. The written report should be submitted within 24-72 hours. In urgent cases the result should be reported immediately by telephone (if available) or personally.

 

*     Preservation of specimens

 

*     Materials and reagents

 

1.      Adhesive tape

2.      Applicator sticks, wooden

3.      Bottles, 1000 ml

4.      Labels

5.      Pen or marker for labeling

6.      Vials, 20 ml, with tight-fitting screw-caps

7.      10% formalin (formaldehyde)

 

*     Technique

 

1.      Label two 20-ml vials with patient’s name or number. Write F in the upper right-hand corner of the label on one vial.

2.      Fill the "F" vial about half full with 10% formalin.

3.      With an applicator stick, pick up a portion of the stool to include areas from the inside and edges of the sample and mix with the 10% formalin. Be sure to mix very well; break up lumps. Use enough, but not too much stool so that the mixture will occupy about 2/3 to 3/4 of the vial.

4.      Screw the caps of the vials securely. Wrap a piece of adhesive tape around the top of each vial to prevent leaking.

5.      Pack the vials carefully in a box or shipping container and send to the reference laboratory. Be sure that the vials are surrounded by absorbent materials (e.g. cotton wool, newspaper) and are packed so they will not break.

6.      Be sure to include the necessary information: patient’s name or number, date of shipping, organisms you found.

 

For long-term preservation, faecal samples may be stored in 2.5% (weight/volume) potassium dichromate in which oocysts remain for as long as six months.

 

*     Disposal of specimens

 

1.      If stools are collected in paper boxes, the way to dispose of them is by burning the entire container. If they cannot be burnt, or if the stool was collected in a metal or glass container, add enough 10% formalin to cover the stool left in the container. This will kill any parasites that might be present. Allow to stand for an hour or more before discarding or washing (if the container is glass).

2.      Slides used for wet mounts should be put in a pan of disinfectant (e.g., sodium hypochlorite) for at least an hour before washing. Use an applicator stick to push the coverslip off into a breaker or small pan of disinfectant and then put the slide into another pan of disinfectant.

3.      Coverslips break easily, and if put in with the slides, they may break and cut the hands of the person washing them.

4.      Funnels, stoppers, and centrifuge tubes should also be put into disinfectant for an hour before washing.

5.      Applicator sticks and gauze squares should be burned. If burning is not possible, they can be discarded after soaking in disinfectant.

 

*     Quality assurance for faecal examination

 

To ensure accurate and reliable results, good laboratory practices must be applied to laboratory procedure for diagnosing parasitic infections. Quality assurance must apply to collection of specimens, preparation of reagents, performance of the techniques, examination of the preparations and reporting. National level laboratories may be motivated to organize National External Quality Assessment Schemes for strengthening the quality assurance programme especially Internal Quality Control for the regional/peripheral laboratories.

 

*     Diagnostic procedures to be performed at different levels

 

*     Level 1: Peripheral level

 

*     Smear examination for intestinal protozoa and Helminths

*     Smear examination for P. carinii

*     Smear examination for Cryptosporidia

 

*     Level 2: Intermediate level (regional hospital, provincial hospital /university)

 

*     Histopathology for P. carinii, T. gondii

*     Antigen demonstration

*     Special stains for Microsporidia, Cryptosporidia,

*     Cyclospora, Isospora, P. carinii and T. gondii

 

*     Level 3: Central level (reference laboratories and centres of excellence)

 

*     Demonstration of antigen by ELISA, PCR and probes

*     Strain differentiation

 

*      References

 

*     WHO Library Cataloging in Publication, Basic Laboratory Methods in Medical Parasitology 

(1991)

*     Cheesbrough M. (1991) Medical Laboratory Manual for Tropical Countries, Volume I.

*     Forbes BA, Sahm DF, Weissfield AS Diagnostic Microbiology, 1998, 10th edition.

 

Moura H et al. Gram-chromotrope (1996): A new technique that enhances detection of microsporidial spores in clinical sample. J Eukaryot Microbiol; 43 (5): 94S-95S.

 

*      Appendices

 

*     Reagents and Solutions

 

*     Lugol’s iodine (Stock 5% Solution)

Iodine 5 g

Potassium iodide (KI) 10 g

Distilled water up to 100 ml

Dissolve the potassium iodide in about 30 ml of the water. Add the iodine and mix until dissolved. Add a further 70 ml of water and mix well. Store in a brown bottle.

*     Lugol’s iodine (1% Solution for wet mounts)

Lugol’s iodine (stock, 5% solution) 5 ml

Saline solution, isotonic 20 ml

Measure the isotonic saline into a dispensing or dropping bottle. Add the 5% Lugol’s iodine stock solution. Mix thoroughly. This will give a 1% iodine solution which will satisfactorily stain cysts.

*     Buffered methylene blue stain

Methylene blue powder 1 g

Disodium hydrogen phosphate 3 g

Potassium dihydrogen phosphate 1 g

Distilled water 300 ml

Weigh out the methylene blue powder and put in a clean dry mortar. Add the disodium hydrogen phosphate and potassium dihydrogen phosphate. With a pestle, grind the dye and phosphate powders together and mix thoroughly. Weigh 1 g portions of the mixture and put in a small well-stoppered vials.

*     Preparations of stain

 

Put 1 g of the mixture in a 500 ml flask. Add the distilled water and shake the flask or stir to dissolve the dye mixture. Filter through filter paper into a 500 ml clean, dry, glass-stoppered bottle. This stain will remain will remain good for two years or more.

 

*      PVA-fixative preparation

Glycerol 1.5 ml

Polyvinyl alcohol (PVA) powder (low viscosity) 5.0 g

Distilled water 62.5 ml

In a small beaker, add the glycerol to the PVA powder and mix thoroughly with a glass rod until all particles appear coated with the glycerol. Scrape the mixture into a 125 ml flask. Add the distilled water, stopper, and leave at room temperature for three hours or overnight. Swirl mixture occasionally to mix.

*     Carbol-fuchsin solution

Basic fuchsin 10 g

Ethanol, absolute, technical grade 100 ml

Phenol 50 g

Distilled water 1 l

*     Preparation

 

Weigh the basic fuchsin powder and transfer it into a 1.5 litre bottle. Add 100 ml of absolute ethanol and dissolve the dye completely. Weigh the phenol in a beaker and dissolve in a small volume of distilled water. Add the aqueous phenol solution to the dye solution and mix well. Add the rest of the water, mix well and label the bottle. The dye solution will be stable indefinitely.

 

*     Hydrochloric acid-ethanol solution

Hydrochloric acid (concentrated) 1 ml

Ethanol 95% 100 ml

Put 100 ml of 95% ethanol into a clean 250 ml bottle with glass stopper. Add 1 ml of concentrated hydrochloric acid and then mix.

*      Glycerol-malachite green solution (or methylene blue) solution

Glycerol 100 ml

3% Aqueous malachite green, or 3% aquous methylene blue 1ml

Distilled water 100 ml

Grind some malachite green or methylene blue powder with a pestle in a clean, dry mortar. Weigh out 3 g of the powder, pour it into a bottle and add distilled water to give 100 ml. Seal and label the bottle 3% aqueous malachite green or 3% methylene blue . Store in the cabinet away from light.

To prepare the solution, add 1 ml of 3% aqueous solution into a 250 ml bottle. Add 100 ml of glycerol and 100 ml of distilled water and seal the bottle and mix thoroughly before use.

*      Hydrochloric acid-methanol solution

Hydrochloric acid (concentrated) 3 ml

Methanol, absolute 100 ml

Measure 100 ml of absolute methanol and pour into a clean 250 ml bottle with glass stopper. Add 3 ml of concentrated acid and mix.

 

 

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